PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G260900.1
Common NameB456_007G260900, LOC105804457
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 276aa    MW: 30538.2 Da    PI: 5.9111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G260900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183281255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +g+WvAeI+d ++   + r +lg+f+tae+Aa+a+++a+  l+g
  Gorai.007G260900.1 32 KFVGVRQRP-SGKWVAEIKDTTK---NIRMWLGTFDTAEDAARAYDEAACLLRG 81
                        799******.7*********443...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-193289IPR016177DNA-binding domain
SMARTSM003801.7E-353295IPR001471AP2/ERF domain
PfamPF008471.9E-123281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-283289IPR001471AP2/ERF domain
PROSITE profilePS5103219.5723289IPR001471AP2/ERF domain
CDDcd000189.50E-323288No hitNo description
PRINTSPR003676.5E-83344IPR001471AP2/ERF domain
PRINTSPR003676.5E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEIQFQQQKS VIPVSKGSKF KGRNKKINKV NKFVGVRQRP SGKWVAEIKD TTKNIRMWLG  60
TFDTAEDAAR AYDEAACLLR GSNTRTNFVT HVSFDSPLAS RIRNLLNTKK EAKQQTVLAS  120
APTSFSLSLS PSPSPSPSPS SSITTSSGSC NSGGGLSNEN SSPVEMVQDT QLFDDAYKPD  180
MSNCTRELEC ASSQSDFSYT CETGFNRFLY TQEIMNFPEE TGSELTEFER MKVERQISAS  240
LYAMNGVQEC IETVHESGEA LWDLPPLCSL FSYKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-163388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492552.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0D2QZN00.0A0A0D2QZN0_G
STRINGVIT_08s0007g07250.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16007712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-29related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]